Software

• covld
  Estimating linkage disequilibrium between loci with unknown phase. Code developed for Rogers, Alan R. and Chad Huff. 2009. Linkage disequilibrium between loci with unknown phase. Genetics, 182(3):839-844.
• legofit
  Estimate the history of size, subdivision, and admixture, using frequencies of nucleotide site patterns.
• poco  [30 March 2009 18:39:11.] 
  Polymorphic containers in C. Package includes vectors, lists, and binary trees. Inspired by the standard template library of C++.
• ldpsiz
  Package of C programs to predict linkage disequilibrium (LD) from the history of population size and to estimate history parameters from LD. Multithreaded. Depends on Gnu Scientific Library. Developed for Rogers, Alan R. 2014. How population growth affects linkage disequilibrium. Genetics